Description Usage Arguments Details Value Note See Also Examples
Phasing of a half-sib family group.
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genotypeMatrix |
|
bmh_forwardVectorSize |
|
bmh_excludeFP |
|
bmh_nsap |
|
output |
|
This function calls the bmh
, ssp
and phf
functions.
Returns a list of matrices. The first element (phasedHalfsibs) is a matrix with two rows (phased haplotypes) per individual (first paternal and second maternal). Data in format 0 (A), 1 (B) and 9 (unphased or missing).
The second (sireHaplotype) and third (blockStructure) elements are the same as the output of ssp
and bmh
.
Only this function needs to be called to phase a half-sib family. The genotype's matrix must contain individuals from only one half-sib family and one ordered chromosome.
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