para: Parallel Analysis of Data
In hsphase: Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data

This function uses the list of matrices (the output of cs) and runs one of the options, on each element of the list, in parallel.

1 2	para(halfsibs, cpus = 1, option = "bmh", type = "SOCK", bmh_forwardVectorSize = 30, bmh_excludeFP = TRUE, bmh_nsap = 3, pmMethod = "constant")

`halfsibs`	`list` list of matrices of half-sibs (can be generated with `hss` and `cs` functions)
`cpus`	`numeric` number of CPUs (thread)
`option`	`character` type of analysis
`type`	`character` type of cluster for parallel analysis
`bmh_forwardVectorSize`	`integer` number of heterozygous sites used to validate recombination events or check for genotyping errors
`bmh_excludeFP`	`logical` exclude SNPs that may cause heterozygous sites in the sire due to genotyping errors or map errors
`bmh_nsap`	`integer` number of SNPs per block
`pmMethod`	`character` method for creating the recombination matrix

Type of analysis can be bmh, ssp, aio, pm, or rec (refer to pm, rplot and vignette for more information about rec).

Returns a list of matrices with the results (formats specific to the option selected).

1	# Please run demo(hsphase)

hsphase documentation built on May 2, 2019, 3:44 p.m.

hsphase index

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