para: Parallel Analysis of Data

In hsphase: Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data

Parallel Analysis of Data

Description

This function uses the list of matrices (the output of cs) and runs one of the options, on each element of the list, in parallel.

Usage

para(halfsibs, cpus = 1, option = "bmh", type = "SOCK", bmh_forwardVectorSize = 30,
bmh_excludeFP = TRUE, bmh_nsap = 3, pmMethod = "constant")

Arguments

halfsibs	list list of matrices of half-sibs (can be generated with hss and cs functions)
cpus	numeric number of CPUs (thread)
option	character type of analysis
type	character type of cluster for parallel analysis
bmh_forwardVectorSize	integer number of heterozygous sites used to validate recombination events or check for genotyping errors
bmh_excludeFP	logical exclude SNPs that may cause heterozygous sites in the sire due to genotyping errors or map errors
bmh_nsap	integer number of SNPs per block
pmMethod	character method for creating the recombination matrix

Details

Type of analysis can be bmh, ssp, aio, pm, or rec (refer to pm, rplot and vignette for more information about rec).

Value

Returns a list of matrices with the results (formats specific to the option selected).

Examples

# Please run demo(hsphase)

hsphase documentation built on May 29, 2024, 2:20 a.m.