pedigreeNaming: Fix Pedigree Errors
In hsphase: Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data
View source: R/namingInferedPedigree.R
pedigreeNaming R Documentation
Fix Pedigree Errors
Description
Tries to link the inferred pedigree from rpoh with sire IDs in the original pedigree and fix pedigree errors.
Usage
pedigreeNaming(inferredPedigree, realPedigree)
Arguments
inferredPedigree
matrix. Inferred pedigree (output of rpoh).
realPedigree
matrix. Original pedigree.
Details
This function calls bmh and recombinations to count the number of recombinations in each half-sib group.
Value
Returns the inferred pedigree with the best match to sire names used in the original pedigree file.
See Also
rpoh and ohg
Examples
# Please run demo(hsphase)
hsphase documentation built on Feb. 17, 2026, 5:07 p.m.
R Package Documentation
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View source: R/namingInferedPedigree.R
| pedigreeNaming | R Documentation |
Fix Pedigree Errors
Description
Tries to link the inferred pedigree from rpoh with sire IDs in the original pedigree and fix pedigree errors.
Usage
pedigreeNaming(inferredPedigree, realPedigree)
Arguments
inferredPedigree |
|
realPedigree |
|
Details
This function calls bmh and recombinations to count the number of recombinations in each half-sib group.
Value
Returns the inferred pedigree with the best match to sire names used in the original pedigree file.
See Also
rpoh and ohg
Examples
# Please run demo(hsphase)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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