pedigreeNaming: Fix Pedigree Errors
In hsphase: Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data

Tries to link the inferred pedigree from rpoh with the sire IDs in the original pedigree and fix pedigree errors.

1	pedigreeNaming(inferredPedigree, realPedigree)

`inferredPedigree`	`matrix` inferred pedigree (output of `rpoh` )
`realPedigree`	`matrix` original pedigree

This function calls the bmh and recombinations functions to count the number of recombinations in each half-sib group.

Returns the inferred pedigree with the best fit to the sire names used in the original pedigree file.

rpoh and ohg

1	# Please run demo(hsphase)

Loading required package: snowfall
Loading required package: snow

hsphase documentation built on May 2, 2019, 3:44 p.m.

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