readGenotype: Read and Check the Genotype File

In hsphase: Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data

Read and Check the Genotype File

Description

This function reads and checks genotype files.

Usage

readGenotype(genotypePath, separatorGenotype = " ", check = TRUE)

Arguments

genotypePath	character genotype path (animals (rows) and SNP (columns), SNP should be coded as 0, 1 and 2 for respectively AA, AB and BB. Use 9 for missing data. please refer to vignette for more information)
separatorGenotype	character separator character for genotype
check	logical check the genotype file for possible errors

Value

Returns the genotype matrix.

Note

Please refer to vignette for more information.

Examples

# A comprehensive demo and example dataset is available from
# http://www-personal.une.edu.au/~cgondro2/hsphase.html

hsphase documentation built on May 29, 2024, 2:20 a.m.