Man pages for hsphase
Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data
| aio | All-in-one Phasing |
| bmh | Block Partitioning |
| co | Crossover Detection |
| cs | Chromosome Splitter |
| dot-fastdist | Calculate Genotypic Distances |
| dot-maf | Calculate Minor Allele Frequency (MAF) |
| dot-simulateHalfsib | Simulate Half-Sibling Genotypes |
| genotypes | Example of Genotype Data Set |
| hbp | Haplotype Blocks of Phased Data |
| hh | Heatmap of Half-sibs |
| hsphase-package | Phasing, Pedigree Reconstruction, Sire Imputation and... |
| hss | Half-sib Family Splitter |
| imageplot | Image Plot of Blocking Structure |
| impute | Impute of Low Density SNP Marker to High Density (Paternal... |
| map | Example Map File for Genetic Data |
| ohd | Opposing Homozygote Detection |
| ohg | Matrix of Opposing Homozygotes |
| ohplot | Opposing Homozygotes Plot |
| para | Parallel Analysis of Data |
| pedigree | Example Pedigree Data Set |
| pedigreeNaming | Fix Pedigree Errors |
| phf | Half-Sib Family Phasing |
| pm | Probability Matrix |
| pogc | Parent Offspring Group Constructor |
| readGenotype | Read and Check the Genotype File |
| recombinations | Recombination Number |
| rplot | Recombination Plot |
| rpoh | Reconstruct Pedigree Based on Matrix of Opposing Homozygotes |
| ssp | Sire Imputation and Phasing |
