API for iCellR
Analyzing High-Throughput Single Cell Sequencing Data
| Global functions | |
|---|---|
| Rphenograph | Man page Source code |
| add.10x.image | Man page |
| add.adt | Man page |
| add.vdj | Man page |
| adt.rna.merge | Man page |
| bubble.gg.plot | Man page |
| capture.image.10x | Man page |
| cc | Man page |
| cell.cycle | Man page |
| cell.filter | Man page |
| cell.gating | Man page Source code |
| cell.type.pred | Man page |
| change.clust | Man page |
| clono.plot | Man page |
| clust.avg.exp | Man page |
| clust.cond.info | Man page |
| clust.ord | Man page |
| clust.rm | Man page |
| clust.stats.plot | Man page |
| cluster.plot | Man page |
| data.aggregation | Man page |
| data.scale | Man page |
| down.sample | Man page |
| find.dim.genes | Man page |
| findMarkers | Man page |
| find_neighbors | Man page Source code |
| g2m.phase | Man page |
| gate.to.clust | Man page Source code |
| gene.plot | Man page |
| gene.stats | Man page |
| gg.cor | Man page |
| heatmap.gg.plot | Man page |
| hto.anno | Man page |
| i.score | Man page |
| iba | Man page |
| iclust | Man page |
| jaccard_coeff | Source code Source code |
| load.h5 | Man page |
| load10x | Man page |
| make.bed | Man page |
| make.gene.model | Man page |
| make.obj | Man page |
| myImp | Man page |
| norm.adt | Man page |
| norm.data | Man page |
| opt.pcs.plot | Man page |
| prep.vdj | Man page |
| pseudotime | Man page |
| pseudotime.knetl | Man page |
| pseudotime.tree | Man page |
| qc.stats | Man page |
| run.anchor | Man page |
| run.cca | Man page |
| run.clustering | Man page |
| run.diff.exp | Man page |
| run.diffusion.map | Man page |
| run.impute | Man page |
| run.knetl | Man page |
| run.mnn | Man page |
| run.pc.tsne | Man page |
| run.pca | Man page |
| run.phenograph | Man page |
| run.tsne | Man page |
| run.umap | Man page |
| s.phase | Man page |
| spatial.plot | Man page |
| stats.plot | Man page |
| top.markers | Man page |
| vdj.stats | Man page |
| volcano.ma.plot | Man page |
