cell.cycle: Cell cycle phase prediction

In iCellR: Analyzing High-Throughput Single Cell Sequencing Data

Description

This function takes an object of class iCellR and assignes cell cycle stage for the cells.

Usage

cell.cycle(
  object = NULL,
  scoring.List = NULL,
  return.stats = FALSE,
  scoring.method = "tirosh"
)

Arguments

object	A data frame containing gene counts for cells.
scoring.List	Genes that are used as a marker for phases.
return.stats	Return the data or object. If FALSE the object would be returned.
scoring.method	Choose from "coverage" or "tirosh" for scoring method.

Value

The data frame object

iCellR documentation built on Oct. 9, 2021, 5:07 p.m.