hto.anno: Demultiplexing HTOs
In iCellR: Analyzing High-Throughput Single Cell Sequencing Data
Description
Usage
Arguments
Value
Description
Demultiplexing HTOs
Usage
1
hto.anno(hto.data = "data.frame", cov.thr = 10, assignment.thr = 80)
Arguments
hto.data
HTO raw data
cov.thr
A number which average coverage is divided by to set a threshold for low coverage. For example 10 means it is 10 time less than the average. default = 10.
assignment.thr
A percent above which you decide to set as a good sample assignment/HTO, default = 80.
Value
An object of class iCellR
iCellR documentation built on Oct. 9, 2021, 5:07 p.m.
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Description Usage Arguments Value
Description
Demultiplexing HTOs
Usage
1 | hto.anno(hto.data = "data.frame", cov.thr = 10, assignment.thr = 80)
|
Arguments
hto.data |
HTO raw data |
cov.thr |
A number which average coverage is divided by to set a threshold for low coverage. For example 10 means it is 10 time less than the average. default = 10. |
assignment.thr |
A percent above which you decide to set as a good sample assignment/HTO, default = 80. |
Value
An object of class iCellR
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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