clust.ord | R Documentation |
This function takes an object of class iCellR and re-ordersthe clusters based on pseudotime (distance).
clust.ord(
x = NULL,
top.rank = 500,
dist.method = "euclidean",
clust.method = "complete",
how.to.order = "distance"
)
x |
An object of class iCellR. |
top.rank |
A number. Taking the top genes ranked by base mean, default = 500. |
dist.method |
Choose from "euclidean", "maximum", "manhattan", "canberra", "binary" or "minkowski", default = "euclidean". |
clust.method |
Choose from "ward.D", "ward.D2", "single", "complete", "average", "mcquitty", "median" or "centroid", default = "complete". |
how.to.order |
Choose from "distance" and "random". |
An object of class iCellR.
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