qc.stats | R Documentation |
This function takes data frame and calculates the number of UMIs, genes per cell and percentage of mitochondrial genes per cell and cell cycle genes.
qc.stats(
x = NULL,
which.data = "raw.data",
mito.genes = NULL,
s.phase.genes = s.phase,
g2m.phase.genes = g2m.phase
)
x |
A data frame containing gene counts for cells. |
which.data |
Choose from "raw.data" or "main.data", "imputed.data", default = "raw.data". |
mito.genes |
A character vector of mitochondrial genes names , default is the genes starting with mt. |
s.phase.genes |
A character vector of gene names for S phase, default = s.phase. |
g2m.phase.genes |
A character vector of gene names for G2 and M phase, default = g2m.phase. |
The data frame object
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.