Description Usage Arguments Value
This function takes an object of class iCellR and marker genes for clusters and performs pseudotime for differentiation or time course analysis.
1 2 3 4 5 6 7 8 9 10 11 | pseudotime.tree(
x = NULL,
marker.genes = "NULL",
clust.names = "NULL",
dist.method = "euclidean",
clust.method = "complete",
label.offset = 0.5,
type = "classic",
hang = 1,
cex = 1
)
|
x |
An object of class iCellR. |
marker.genes |
A list of marker genes for clusters. |
clust.names |
A list of names for clusters. |
dist.method |
Choose from "euclidean", "maximum", "manhattan", "canberra", "binary" or "minkowski", default = "euclidean". |
clust.method |
Choose from "ward.D", "ward.D2", "single", "complete", "average", "mcquitty", "median" or "centroid", default = "complete". |
label.offset |
Space between names and tree, default = 0.5. |
type |
Choose from "classic", "jitter", "unrooted", "fan", "cladogram", "radial", default = "classic". |
hang |
Hang, default = 1. |
cex |
Text size, default = 1. |
An object of class iCellR.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.