data.aggregation: Merge multiple data frames and add the condition names to...

In iCellR: Analyzing High-Throughput Single Cell Sequencing Data

Description

This function takes data frame and merges them while also adding condition names to cell ids..

Usage

data.aggregation(samples = NULL, condition.names = NULL)

Arguments

samples	A character vector of data.frame object names.
condition.names	A character vector of data.frame condition names.

Value

An object of class iCellR

Examples

demo <- read.table(
        file = system.file('extdata', 'demo_data.txt', package = 'iCellR'),
        as.is = TRUE)

# Lets divide your sample in to 3 samples as if you have 3 samples and want to merge them.
sample1 <- demo[1:30]
sample2 <- demo[31:60]
sample3 <- demo[61:90]

# merge all 3 data and add condition names
demo <- data.aggregation(samples =
        c("sample1","sample2","sample3"),
        condition.names = c("WT","ctrl","KO"))
head(demo)[1:4]

# make iCellR object
myDemo.obj <- make.obj(demo)

iCellR documentation built on Oct. 9, 2021, 5:07 p.m.