Description Usage Arguments Value
This function takes an object of class iCellR and genes and provides a heatmap.
1 2 3 4 5 6 7 | cell.type.pred(
immgen.data = "rna",
gene = "NULL",
top.cell.types = 50,
plot.type = "heatmap",
heat.colors = c("blue", "white", "red")
)
|
immgen.data |
Choose from ,"GSE109125","GSE122108","GSE122597","GSE124829","GSE15907","GSE37448", rna", "uli.rna" or "mca", default = "rna" |
gene |
A set of gene names to used to predict cell type. |
top.cell.types |
Top cell types sorted by cumulative expression, default = 25. |
plot.type |
Choose from "heatmap" od "point.plot", default = "heatmap" |
heat.colors |
Colors for heatmap, default = c("blue" ,"white", "red"). |
An object of class iCellR
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