ips: Interfaces to Phylogenetic Software in R

This package provides functions that wrap popular phylogenetic software for sequence alignment, masking of sequence alignments, and estimation of phylogenies and ancestral character states.

AuthorChristoph Heibl <christoph.heibl@gmx.net>
Date of publication2014-11-10 00:38:44
MaintainerChristoph Heibl <christoph.heibl@gmx.net>
LicenseGPL (>= 2)
Version0.0-7

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Files in this package

ips
ips/TODO
ips/inst
ips/inst/CITATION
ips/NAMESPACE
ips/data
ips/data/ips.28S.rda
ips/data/ips.16S.rda
ips/data/ips.cox1.rda
ips/data/ips.tree.rda
ips/R
ips/R/write.nex.R ips/R/write.phy.R ips/R/terminal.clades.R ips/R/read.fas.R ips/R/prank.R ips/R/noi.R ips/R/unresolve.clade.R ips/R/read.starbeast.R ips/R/multistateMCMC.R ips/R/aliscore.R ips/R/phylo2mafft.R ips/R/mrbayes.mixed.R ips/R/read.nex.R ips/R/pis.R ips/R/traitRateParams.R ips/R/deleteEmptyCells.R ips/R/traitRateOutput.R ips/R/rbeauti.taxonset.R ips/R/raxml.R ips/R/read.beast.table.R ips/R/code.simple.gaps.R ips/R/collapseUnsupportedEdges.R ips/R/read.xml.R ips/R/read.phy.R ips/R/deleteGaps.R ips/R/multistateML.R ips/R/fixNodes.R ips/R/raxml.partitions.R ips/R/extractMRBAYESstats.R ips/R/mafft.R ips/R/read.mrbayes.R ips/R/mrbayes.R ips/R/traitRate.R ips/R/trimEnds.R ips/R/read.beast.R ips/R/descendants.R ips/R/sister.R ips/R/rbeauti.R ips/R/write.partitioned.nex.R ips/R/tipHeights.R ips/R/write.fas.R ips/R/gblocks.R ips/R/extractBEASTstats.R
ips/MD5
ips/DESCRIPTION
ips/ChangeLog
ips/man
ips/man/ips-internal.Rd ips/man/gblocks.Rd ips/man/deleteGaps.Rd ips/man/read.fas.Rd ips/man/ips.tree.Rd ips/man/ips-package.Rd ips/man/noi.Rd ips/man/traitRate.Rd ips/man/aliscore.Rd ips/man/tipHeights.Rd ips/man/sister.Rd ips/man/collapseUnsupportedEdges.Rd ips/man/prank.Rd ips/man/deleteEmptyCells.Rd ips/man/fixNodes.Rd ips/man/trimEnds.Rd ips/man/read.beast.table.Rd ips/man/mrbayes.Rd ips/man/ips.cox1.Rd ips/man/write.fas.Rd ips/man/read.beast.Rd ips/man/rbeauti.Rd ips/man/code.simple.gaps.Rd ips/man/multistate.Rd ips/man/raxml.Rd ips/man/mafft.Rd ips/man/descendants.Rd ips/man/ips.28S.Rd ips/man/raxml.partitions.Rd ips/man/pis.Rd ips/man/write.partitioned.nex.Rd ips/man/ips.16S.Rd

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