mrbayes.prset: MrBayes prior settings

In ips: Interfaces to Phylogenetic Software in R

MrBayes prior settings

Description

Specify parameters for prior distributions for mrbayes.

Usage

mrbayes.prset(
  traitiopr,
  revmatpr,
  aamodelpr,
  aarevmatpr,
  omegapr,
  ny98omega1pr,
  ny98omega3pr,
  m3omegapr,
  codoncatfreqs,
  statefreqpr,
  shapepr,
  ratecorrpr,
  pinvarpr,
  covswitchpr,
  symdirihyperpr,
  topologypr,
  brlenspr,
  treeagepr,
  speciationpr,
  extinctionpr,
  fossilizationpr,
  samplestrat,
  sampleprop,
  popsizepr,
  popvarpr,
  nodeagepr,
  clockratepr,
  clockvarpr,
  cppratepr,
  cppmultdevpr,
  tk02varpr,
  wnvarpr,
  igrvarpr,
  ilnvarpr,
  ratepr,
  generatepr
)

Arguments

traitiopr	A character string
revmatpr	xxx
aamodelpr	xxx
aarevmatpr	xxx
omegapr	xxx
ny98omega1pr	xxx
ny98omega3pr	xxx
m3omegapr	xxx
codoncatfreqs	xxx
statefreqpr	xxx
shapepr	xxx
ratecorrpr	xxx
pinvarpr	xxx
covswitchpr	xxx
symdirihyperpr	xxx
topologypr	xxx
brlenspr	xxx
treeagepr	xxx
speciationpr	xxx
extinctionpr	xxx
fossilizationpr	xxx
samplestrat	xxx
sampleprop	xxx
popsizepr	xxx
popvarpr	xxx
nodeagepr	xxx
clockratepr	xxx
clockvarpr	xxx
cppratepr	xxx
cppmultdevpr	xxx
tk02varpr	xxx
wnvarpr	xxx
igrvarpr	xxx
ilnvarpr	xxx
ratepr	xxx
generatepr	xxx

Details

xxx

Value

A list of parameters for prior distributions.

See Also

mrbayes, mrbayes.lset , mrbayes.mcmc.

ips documentation built on July 8, 2026, 5:07 p.m.