mrbayes.lset: MrBayes model settings

In ips: Interfaces to Phylogenetic Software in R

MrBayes model settings

Description

Specify a model of DNA, Protein or trait evolution for mrbayes.

Usage

mrbayes.lset(
  nucmodel = "4by4",
  nst = 1,
  code = "universal",
  ploidy = "diploid",
  rates = "equal",
  ngammacat = 4,
  nlnormcat = 4,
  nmixtcat = 4,
  nbetacat = 5,
  omegavar = "equal",
  covarion = "no",
  coding = "all",
  parsmodel = "no",
  partition = 1
)

Arguments

nucmodel	A character string
nst	xxx
code	xxx
ploidy	xxx
rates	xxx
ngammacat	xxx
nlnormcat	xxx
nmixtcat	xxx
nbetacat	xxx
omegavar	xxx
covarion	xxx
coding	xxx
parsmodel	xxx
partition	A character string serving as an identifier in a multi-partition model.

Details

xxx

Value

A list of model parameters.

See Also

mrbayes, mrbayes.prset , mrbayes.mcmc.

ips documentation built on July 8, 2026, 5:07 p.m.