forceEqualTipHeights: Equal Tip Heights
In ips: Interfaces to Phylogenetic Software in R
Description
Usage
Arguments
Details
Value
Note
See Also
Description
Modify terminal edge lengths to create "exactly" (see Details)
equal tip heights (sum of edge lengths from root to tip)
Usage
1
forceEqualTipHeights(phy, baseline = "mean")
Arguments
phy
An object of class phylo.
baseline
A character string giving a function to calculate the
baseline tip height, e.g. "min", "max" or "mean".
Details
What is "exactly" equal depends on the precision of the system
(.Machine); in any case the resulting phylogeny will pass
is.ultrametric with default arguments.
Value
An object of class phylo with changed terminal
edge lengths.
Note
forceEqualTipHeights is only intended to correct small rounding
errors in edge lengths, not to make an additive phylogeny ultrametric. For
the latter, see e.g. chronos.
See Also
ips documentation built on July 4, 2019, 5:04 p.m.
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Description Usage Arguments Details Value Note See Also
Description
Modify terminal edge lengths to create "exactly" (see Details) equal tip heights (sum of edge lengths from root to tip)
Usage
1 | forceEqualTipHeights(phy, baseline = "mean")
|
Arguments
phy |
An object of class |
baseline |
A character string giving a function to calculate the
baseline tip height, e.g. |
Details
What is "exactly" equal depends on the precision of the system
(.Machine); in any case the resulting phylogeny will pass
is.ultrametric with default arguments.
Value
An object of class phylo with changed terminal
edge lengths.
Note
forceEqualTipHeights is only intended to correct small rounding
errors in edge lengths, not to make an additive phylogeny ultrametric. For
the latter, see e.g. chronos.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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