Files in ips

Interfaces to Phylogenetic Software in R

MD5

TODO

DESCRIPTION

README.md

NAMESPACE

inst/CITATION

inst/NEWS.Rd

R/setMCMC.R R/trimEnds.R R/matrixBlock.R R/ntip.R R/rc.R R/traitRateParams.R R/oi.R R/terminal.clades.R R/del.miss.R R/are.tips.consecutive.R R/extractBEASTstats.R R/descendants.R R/prank.R R/multistateMCMC.R R/phylo2mst.R R/mrbayes.mcmc.R R/str2cha.R R/collapseUnsupportedEdges.R R/pathd8.R R/terminalSisters.R R/unresolve.clade.R R/findORF.R R/partitionfinder.R R/write.phy.R R/read.xml.R R/rbeauti.taxonset.R R/tipHeights.R R/index2DNAbin.R R/mafft.R R/rbeauti.R R/setClock.R R/read.mrbayes.R R/mrbayes.lset.R R/assembleDataNode.R R/read.starbeast.R R/write.fas.R R/noi.R R/read.beast.R R/deleteEmptyCells.R R/eoi.R R/read.phy.R R/traitRate.R R/splitIntoClades.R R/gblocks.R R/mrbayes.R R/assembleInitNode.R R/fixNodes.R R/code.simple.gaps.R R/read.fas.R R/raxml.partitions.R R/DNAbin2index.R R/aliscore.R R/assembleLoggers.R R/mrbayes.prset.R R/phylo2mafft.R R/neighboringPairs.R R/assembleStateNode.R R/read.nex.R R/multistateML.R R/sister.R R/extractMRBAYESstats.R R/assembleOperators.R R/traitRateOutput.R R/read.R R/pis.R R/mafft.merge.R R/formatSet.R R/raxml.R R/unlistFirstLevel.R R/read.beast.table.R R/deleteGaps.R R/assembleDistributionNode.R R/write.nex.R R/forceEqualTipHeights.R man/mrbayes.prset.Rd man/phylo2mst.Rd man/ips.16S.Rd man/aliscore.Rd man/mrbayes.lset.Rd man/unlistFirstLevel.Rd man/terminalSisters.Rd man/splitIntoClades.Rd man/deleteGaps.Rd man/collapseUnsupportedEdges.Rd man/deleteEmptyCells.Rd man/tipHeights.Rd man/del.miss.Rd man/prank.Rd man/mafft.Rd man/code.simple.gaps.Rd man/rbeauti.Rd man/ips-package.Rd man/mafft.merge.Rd man/ips.cox1.Rd man/oi.Rd man/ntip.Rd man/trimEnds.Rd man/read.Rd man/ips.tree.Rd man/gblocks.Rd man/mrbayes.Rd man/traitRate.Rd man/pis.Rd man/partitionfinder.Rd man/descendants.Rd man/forceEqualTipHeights.Rd man/multistate.Rd man/DNAbin2index.Rd man/mrbayes.mcmc.Rd man/write.fas.Rd man/raxml.partitions.Rd man/read.beast.Rd man/index2DNAbin.Rd man/fixNodes.Rd man/read.beast.table.Rd man/pathd8.Rd man/sister.Rd man/raxml.Rd man/phylo2mafft.Rd man/ips.28S.Rd man/neighboringPairs.Rd man/ips-internal.Rd

data/ips.16S.rda

data/ips.cox1.rda

data/ips.tree.rda

data/ips.28S.rda

ips documentation built on July 4, 2019, 5:04 p.m.