Nothing
#' @title Reading Sequence Files
#' @description Read DNA and amino acid sequences from FASTA, PHILIP, and NEXUS
#' formatted files.
#' @param x A character string, giving the file name.
#' @param text A character string in FASTA format.
#' @return An matrix (aligned sequences) or list (unaligned sequences) of class
#' \code{DNAbin} or \code{AAbin}.
#' @references Maddison, D.R., D.L. Swofford, and W.P. Maddison. 1997. NEXUS: an
#' extensible file format for systematic information. \emph{Syst. Biol.}
#' \bold{46}: 590-621.
#' @seealso \code{\link{mafft}} and \code{\link{prank}} for sequence alignment,
#' \code{\link{gblocks}} and \code{\link{aliscore}} for quality check and
#' cleaning of sequence alignments, \code{\link{cbind.DNAbin}} for
#' concatenation of sequence alignments.
#' @examples
#' ## bark beetle COX1 sequences
#' data(ips.cox1)
#' ## create temporary file names
#' format <- c(".fas", ".phy", ".nex")
#' fn <- sapply(format, tempfile,
#' pattern = "ips", tmpdir = tempdir())
#' ## write sequences files
#' write.fas(ips.cox1, fn[".fas"])
#' write.phy(ips.cox1, fn[".phy"])
#' write.nex(ips.cox1, fn[".nex"])
#' ## read sequence files
#' fas <- read.fas(fn[".fas"])
#' phy <- read.phy(fn[".phy"])
#' nex <- read.nex(fn[".nex"])
#' ## remove sequence files
#'unlink(fn)
#' @name read
NULL
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.