Man pages for ips
Interfaces to Phylogenetic Software in R

aliscoreMasking of Sequence Alignments with ALISCORE
code.simple.gapsSimple Gap/Indel Coding
collapseUnsupportedEdgesCollapse Unsupported Edges
deleteEmptyCellsDelete Spurious Rows and Columns from DNA Alignments
deleteGapsRemove Gap/Indel Positions from Alignment
descendantsDescendants of an Internal Node in a Phylogeny
fixNodesStandard Node Numbering in Phylo Objects
gblocksMasking of Sequence Alignments with GBLOCKS
ips.16SBark Beetle 16S Sequences
ips.28SBark Beetle 28S Sequences
ips.cox1Bark Beetle COX1 Sequences
ips-internalInternal IPS Functions
ips-packageInterfaces to Phylogenetic Software
ips.treeIps Phylogeny
mafftDNA Sequence Alignment with MAFFT
mrbayesBayesian MCMC Tree Search with MrBayes
noiIdentification of MRCAs for Clades
pisNumber of Potentially-Informative Sites
raxmlMaximum Likelihood Tree Estimation with RAxML
raxml.partitionsPartition scheme for RAxML
rbeautiXML Input Files for BEAST
read.beastRead Bayesian Trees
read.beast.tableExtract node data from BEAST chronogram
read.fasRead DNA Sequences
sisterIdentification of Sister Nodes and Clades
tipHeightsTip Heights in a Phylogenetic Tree
traitRateTrait-Dependent Shifts in Molecular Rate
trimEndsTrim Alignment Ends
write.fasWrite DNA Sequences to File
write.partitioned.nexWrite partitioned and commented NEXUS files
ips documentation built on May 29, 2017, 3:24 p.m.