API for kmeRtone
Multi-Purpose and Flexible k-Meric Enrichment Analysis Software
| Global functions | |
|---|---|
| .onLoad | Source code |
| Coordinate | Man page |
| EXPLORE | Man page Source code |
| Kmer_Table | Man page |
| NCBI_Genome | Man page |
| SCORE | Man page Source code |
| STUDY_ACROSS_POPULATIONS | Man page Source code |
| STUDY_ACROSS_SPECIES | Man page Source code |
| STUDY_CANCER_GENES | Man page Source code |
| STUDY_GENIC_ELEMENTS | Man page Source code |
| UCSC_Genome | Man page |
| `[.Coordinate` | Source code |
| `[.NCBI_Genome` | Source code |
| `[.UCSC_Genome` | Source code |
| addAlphaCol | Man page Source code |
| bedToCoor | Man page Source code |
| buildControl | Man page Source code |
| buildKmerTable | Man page Source code |
| buildMidPatternKmerTable | Man page Source code |
| buildRESTurl | Man page Source code |
| buildRangedKmerTable | Man page Source code |
| calKmerSkew | Man page Source code |
| calPWM | Man page Source code |
| catHeader | Man page Source code |
| countBaseComposition | Man page Source code |
| countChoppedKmers | Man page Source code |
| countDistribution | Man page Source code |
| countKmers | Man page Source code |
| countMidPatternContext2 | Man page Source code |
| countMidPatternKmers | Man page Source code |
| countPointContext2 | Man page Source code |
| countRangedKmers | Man page Source code |
| countRevCompKmers | Man page Source code |
| countSlidingWindow | Man page Source code |
| countSlidingWindow2 | Man page Source code |
| count_substring_fixed | Man page Source code |
| count_substring_regex | Man page Source code |
| downloadNCBIGenomes | Man page Source code |
| downloadUCSCgenome | Man page Source code |
| example_genome_coor | Man page |
| example_kmeRtone_score | Man page |
| extractKmers | Man page Source code |
| generateGenicElementCoor | Man page Source code |
| generateIntergenicCoor | Man page Source code |
| getCOSMICauthURL | Man page Source code |
| getCOSMICcancerGeneCensus | Man page Source code |
| getCOSMIClatestVersion | Man page Source code |
| getCOSMICmutantExport | Man page Source code |
| getEnsemblData | Man page Source code |
| getEnsemblRegionFeatures | Man page Source code |
| getEnsemblVariantFeatures | Man page Source code |
| getEnsemblVariantFeatures_serial | Man page Source code |
| getGnomADvariants | Man page Source code |
| getICTVvirusMetadataResource | Man page Source code |
| getNCBIassemblySummary | Man page Source code |
| getScores | Man page Source code |
| getUCSCgenePredTable | Man page Source code |
| getVCFmetainfo | Man page Source code |
| initKmerTable | Man page |
| kmeRtone | Man page Source code |
| loadCoordinate | Man page Source code |
| loadGenome | Man page Source code |
| loadGenomicContents | Man page Source code |
| mapKmers | Man page Source code |
| mergeCoordinate | Man page Source code |
| mixColors | Man page Source code |
| partitionCoordinate | Man page Source code |
| persistentDownload | Man page Source code |
| readBED | Man page Source code |
| readFASTA | Man page Source code |
| readVCF | Man page Source code |
| readVCF2 | Man page Source code |
| removeRegion | Man page Source code |
| reverseComplement | Man page Source code |
| scoreKmers | Man page Source code |
| selectGenomesForCrossSpeciesStudy | Man page Source code |
| selectRepresentativeFromASM | Man page Source code |
| simulatePopulation | Man page Source code |
| splitFASTA | Man page Source code |
| system3 | Man page Source code |
| trimCoordinate | Man page Source code |
| writeBED | Man page Source code |
| writeFASTA | Man page Source code |
| writeVCF | Man page Source code |
