CIS: Visualize and analyze network of common integration sites...
In lisat: Longitudinal Integration Site Analysis Toolkit
CIS R Documentation
Visualize and analyze network of common integration sites (CIS)
Description
Visualize and analyze network of common integration sites (CIS)
Usage
CIS(IS_raw, connect_distance = 50000)
Arguments
IS_raw
Data frame containing integration site data (must have Locus, Chr, nearest_gene_name columns)
connect_distance
Numeric threshold for connecting IS (default = 50000 bp)
Value
Data frame with top 10 CIS network metrics (Chr, Locus, Gene, Total_dots, etc.)
lisat documentation built on March 27, 2026, 5:07 p.m.
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| CIS | R Documentation |
Visualize and analyze network of common integration sites (CIS)
Description
Visualize and analyze network of common integration sites (CIS)
Usage
CIS(IS_raw, connect_distance = 50000)
Arguments
IS_raw |
Data frame containing integration site data (must have Locus, Chr, nearest_gene_name columns) |
connect_distance |
Numeric threshold for connecting IS (default = 50000 bp) |
Value
Data frame with top 10 CIS network metrics (Chr, Locus, Gene, Total_dots, etc.)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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