ideogram_plot: Plot chromosome ideogram with integration site annotations
In lisat: Longitudinal Integration Site Analysis Toolkit
View source: R/is_density_ideogram_plot.R
ideogram_plot R Documentation
Plot chromosome ideogram with integration site annotations
Description
This function generates a chromosome ideogram plot showing the density and position
of integration sites (IS) using the RIdeogram package.
Usage
ideogram_plot(IS_raw, output_dir)
Arguments
IS_raw
Data frame containing integration site data (columns: Chr, Locus required)
output_dir
Character, path to output directory for the PDF plot
Value
None (generates a PDF file in output_dir)
lisat documentation built on March 27, 2026, 5:07 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/is_density_ideogram_plot.R
| ideogram_plot | R Documentation |
Plot chromosome ideogram with integration site annotations
Description
This function generates a chromosome ideogram plot showing the density and position of integration sites (IS) using the RIdeogram package.
Usage
ideogram_plot(IS_raw, output_dir)
Arguments
IS_raw |
Data frame containing integration site data (columns: Chr, Locus required) |
output_dir |
Character, path to output directory for the PDF plot |
Value
None (generates a PDF file in output_dir)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.