IS_treemap: Generate treemap of integration site clone contribution
In lisat: Longitudinal Integration Site Analysis Toolkit

IS_treemap

R Documentation

Generate treemap of integration site clone contribution

Description

This function creates a treemap visualization of the top 1000 integration site (IS) clone contributions, grouped by patient time points with custom color perturbation.

Usage

IS_treemap(
  IS_raw = IS_raw,
  Patient_timepoint = Patient_timepoint,
  Timelevels = NULL
)

Arguments

`IS_raw`	Data frame containing IS data (columns: Sample, Locus, Clone_contribution required)
`Patient_timepoint`	Data frame mapping Sample_ID to Time_Point (columns: Sample_ID, Time_Point required)
`Timelevels`	Character vector, optional custom order of time points (default: NULL, natural sort)