pmd_analysis: Calculate PMD (Proportional Modular Diversity) for...
In lisat: Longitudinal Integration Site Analysis Toolkit
pmd_analysis R Documentation
Calculate PMD (Proportional Modular Diversity) for integration site data
Description
This function computes UIS count, top clone contribution percentage, and PMD metrics (Richness/Eveness/PMD)
for integration site data, and maps samples to patient time points.
Usage
pmd_analysis(IS_raw, Patient_timepoint)
Arguments
IS_raw
Data frame containing integration site data (columns: Sample, Clone_contribution required)
Patient_timepoint
Data frame mapping Sample_ID to Time_Point (columns: Sample_ID, Time_Point required)
Value
Data frame with PMD metrics (UIS, TOP_P, Richness, Eveness, PMD, Sample, Time)
lisat documentation built on March 27, 2026, 5:07 p.m.
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| pmd_analysis | R Documentation |
Calculate PMD (Proportional Modular Diversity) for integration site data
Description
This function computes UIS count, top clone contribution percentage, and PMD metrics (Richness/Eveness/PMD) for integration site data, and maps samples to patient time points.
Usage
pmd_analysis(IS_raw, Patient_timepoint)
Arguments
IS_raw |
Data frame containing integration site data (columns: Sample, Clone_contribution required) |
Patient_timepoint |
Data frame mapping Sample_ID to Time_Point (columns: Sample_ID, Time_Point required) |
Value
Data frame with PMD metrics (UIS, TOP_P, Richness, Eveness, PMD, Sample, Time)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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