is_in_immune_gene: Plot Immune-associated gene clone contribution

In lisat: Longitudinal Integration Site Analysis Toolkit

Plot Immune-associated gene clone contribution

Description

This function filters integration site data for immune-associated genes (within specified distance/threshold) and generates a dot plot of clone contribution percentages for these genes.

Usage

is_in_immune_gene(IS_raw, Distance = 1e+05, threashold = 0.001)

Arguments

IS_raw	Data frame with annotated integration site data (columns: nearest_gene_name, nearest_distance, Clone_contribution, Sample required)
Distance	Numeric, maximum distance to immune gene (default: 100000 bp)
threashold	Numeric, minimum clone contribution threshold (default: 0.001)

Value

ggplot object (dot plot of clone contribution for immune-associated genes)

lisat documentation built on March 27, 2026, 5:07 p.m.