Linked_timepoints: Generate Linked Timepoint Sankey + Stacked Bar Chart
In lisat: Longitudinal Integration Site Analysis Toolkit
Linked_timepoints R Documentation
Generate Linked Timepoint Sankey + Stacked Bar Chart
Description
Creates a highly customizable combined Sankey-flow + stacked bar chart to visualize clonal proportion changes across timepoints,
with manual control over flow polygon shapes and precise formatting of top integration sites (top 10 + "Others" category).
All core logic and data processing steps remain identical to the original code - only namespace prefixes (::) added and lag() fixed.
Usage
Linked_timepoints(IS_raw, Patient_timepoint, Timelevels = NULL)
Arguments
IS_raw
Data frame containing integration site data (required columns: Clone_contribution, Sample, nearest_gene_name, Chr, Locus)
Patient_timepoint
Data frame mapping Sample_ID to Time_Point (columns: Sample_ID, Time_Point required)
Timelevels
Character vector (optional). Custom ordered levels for time points (overrides natural sort). Default = NULL.
Value
ggplot object. Combined Sankey-flow + stacked bar chart of top 10 integration site proportions across timepoints.
lisat documentation built on March 27, 2026, 5:07 p.m.
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| Linked_timepoints | R Documentation |
Generate Linked Timepoint Sankey + Stacked Bar Chart
Description
Creates a highly customizable combined Sankey-flow + stacked bar chart to visualize clonal proportion changes across timepoints, with manual control over flow polygon shapes and precise formatting of top integration sites (top 10 + "Others" category). All core logic and data processing steps remain identical to the original code - only namespace prefixes (::) added and lag() fixed.
Usage
Linked_timepoints(IS_raw, Patient_timepoint, Timelevels = NULL)
Arguments
IS_raw |
Data frame containing integration site data (required columns: Clone_contribution, Sample, nearest_gene_name, Chr, Locus) |
Patient_timepoint |
Data frame mapping Sample_ID to Time_Point (columns: Sample_ID, Time_Point required) |
Timelevels |
Character vector (optional). Custom ordered levels for time points (overrides natural sort). Default = NULL. |
Value
ggplot object. Combined Sankey-flow + stacked bar chart of top 10 integration site proportions across timepoints.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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