get_feature: Annotate integration site (IS) data with genomic features
In lisat: Longitudinal Integration Site Analysis Toolkit
get_feature R Documentation
Annotate integration site (IS) data with genomic features
Description
This function adds genomic feature annotations (gene/exon/intron overlap, nearest gene info)
to raw integration site data, standardizes chromosome naming, and calculates clone contribution.
Usage
get_feature(IS_raw)
Arguments
IS_raw
Data frame containing raw IS data with columns: Sample, Chr, Locus, SCount, Strand
Value
Data frame with annotated genomic features and clone contribution
lisat documentation built on March 27, 2026, 5:07 p.m.
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| get_feature | R Documentation |
Annotate integration site (IS) data with genomic features
Description
This function adds genomic feature annotations (gene/exon/intron overlap, nearest gene info) to raw integration site data, standardizes chromosome naming, and calculates clone contribution.
Usage
get_feature(IS_raw)
Arguments
IS_raw |
Data frame containing raw IS data with columns: Sample, Chr, Locus, SCount, Strand |
Value
Data frame with annotated genomic features and clone contribution
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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