Files in mashr
Multivariate Adaptive Shrinkage
configure
MD5
README.md
NAMESPACE
DESCRIPTION
LICENSE
configure.win
cleanup
R/cov_udi.R
R/RcppExports.R
R/est_cor.R
R/likelihoods_origdata.R
R/simulations_contrast.R
R/get_functions.R
R/posterior.R
R/posterior_common_cov.R
R/set_data.R
R/likelihoods_scaleddata.R
R/compute_covs.R
R/posterior_lowmem.R
R/matrix_utils.R
R/simulations.R
R/extreme_deconvolution.R
R/data2cov.R
R/plots.R
R/mash.R
R/opt.R
R/ed.R
src/RcppExports.cpp
src/mash.cpp
src/extreme_deconvolution.cpp
src/Makevars.in
src/mash.h
inst/COPYRIGHTS
inst/CITATION
inst/doc/intro_mash.html
inst/doc/intro_correlations.Rmd
inst/doc/mash_sampling.R
inst/doc/intro_mashcommonbaseline.R
inst/doc/intro_mashcommonbaseline.Rmd
inst/doc/intro_correlations.R
inst/doc/intro_mashbaselinemean.R
inst/doc/intro_correlations.html
inst/doc/eQTL_outline.R
inst/doc/intro_mash_dd.Rmd
inst/doc/intro_mashbaselinemean.html
inst/doc/mash_sampling.html
inst/doc/intro_mashbaselinemean.Rmd
inst/doc/simulate_noncanon.R
inst/doc/simulate_noncanon.Rmd
inst/doc/intro_mashcommonbaseline.html
inst/doc/simulate_noncanon.html
inst/doc/intro_mash.R
inst/doc/intro_mash_dd.R
inst/doc/eQTL_outline.Rmd
inst/doc/eQTL_outline.html
inst/doc/intro_mash_dd.html
inst/doc/mash_sampling.Rmd
inst/doc/intro_mash.Rmd
inst/misc/uncrustify_default.cfg
inst/misc/pre-commit.sh
inst/misc/post-commit.sh
inst/misc/LICENSE-extreme-deconvolution
inst/code/get_est_null_cor.R
inst/code/test_post.R
inst/code/test1.R
inst/code/test_lik.R
inst/code/compare_ed_vs_teem.Rmd
build/vignette.rds
tests/testthat.R
tests/testthat/test_cov.R
tests/testthat/test_cov_udi.R
tests/testthat/test_simple_sims.R
tests/testthat/ExDeconDemo_c.log
tests/testthat/test_precomputed.R
tests/testthat/test_sampling.R
tests/testthat/test_Varray.R
tests/testthat/test_posterior_common_cov.R
tests/testthat/test_likelihood_common_cov.R
tests/testthat/test_set_data.R
tests/testthat/test_estimate_cor.R
tests/testthat/test_likelihood.R
tests/testthat/test_ash.R
tests/testthat/test_ed.R
tests/testthat/test_cpp_computation.R
tests/testthat/compute_posterior_matrices_data.RData
tests/testthat/test_getfunctions.R
tests/testthat/ExDeconDemo_loglike.log
tests/testthat/test_posterior.R
tests/testthat/calc_lik_matrix_data.RData
vignettes/intro_correlations.Rmd
vignettes/intro_mashcommonbaseline.Rmd
vignettes/intro_mash_dd.Rmd
vignettes/intro_mashbaselinemean.Rmd
vignettes/simulate_noncanon.Rmd
vignettes/eQTL_outline.Rmd
vignettes/mash_sampling.Rmd
vignettes/intro_mash.Rmd
man/teem_wrapper.Rd
man/mash_compute_vloglik.Rd
man/cov_equal_effects.Rd
man/bovy_wrapper.Rd
man/cov_pca.Rd
man/udi_model_matrix.Rd
man/posterior_mean.Rd
man/simple_sims2.Rd
man/cov_simple_het.Rd
man/get_n_significant_conditions.Rd
man/posterior_cov.Rd
man/mash_set_data.Rd
man/contrast_matrix.Rd
man/simple_sims.Rd
man/cov_from_factors.Rd
man/sim_contrast2.Rd
man/cov_canonical.Rd
man/compute_null_loglik_from_matrix.Rd
man/get_pairwise_sharing.Rd
man/calc_lik_vector.Rd
man/cov_first_singleton.Rd
man/estimate_null_correlation_simple.Rd
man/get_pairwise_sharing_from_samples.Rd
man/mash_plot_meta.Rd
man/mash_set_data_contrast.Rd
man/expand_cov.Rd
man/mash_compute_posterior_matrices.Rd
man/compute_loglik_from_matrix_and_pi.Rd
man/compute_posterior_weights.Rd
man/extreme_deconvolution.Rd
man/cov_ed.Rd
man/sim_contrast1.Rd
man/get_estimated_pi.Rd
man/calc_relative_lik_matrix.Rd
man/mash_estimate_corr_em.Rd
man/cov_all_zeros.Rd
man/optimize_pi.Rd
man/compute_vloglik_from_matrix_and_pi.Rd
man/mash_compute_loglik.Rd
man/scale_cov.Rd
man/get_samples.Rd
man/posterior_mean_matrix.Rd
man/mash_update_data.Rd
man/calc_lik_matrix.Rd
man/get_log10bf.Rd
man/get_significant_results.Rd
man/cov_udi_single.Rd
man/compute_alt_loglik_from_matrix_and_pi.Rd
man/mash.Rd
man/calc_lik_matrix_common_cov.Rd
man/cov_flash.Rd
man/make_names.Rd
man/cov_udi.Rd
man/compute_posterior_matrices_common_cov_R.Rd
man/mash_1by1.Rd
man/compute_posterior_matrices.Rd
man/compute_posterior_matrices_general_R.Rd
