gvtrack.iterator.2d: Defines modification rules for a two-dimensional iterator in...

In misha: Toolkit for Analysis of Genomic Data

Defines modification rules for a two-dimensional iterator in a virtual track

Description

Defines modification rules for a two-dimensional iterator in a virtual track.

Usage

gvtrack.iterator.2d(
  vtrack = NULL,
  sshift1 = 0,
  eshift1 = 0,
  sshift2 = 0,
  eshift2 = 0
)

Arguments

vtrack	virtual track name
sshift1	shift of 'start1' coordinate
eshift1	shift of 'end1' coordinate
sshift2	shift of 'start2' coordinate
eshift2	shift of 'end2' coordinate

Details

This function defines modification rules for one-dimensional iterator intervals in a virtual track.

Iterator interval's 'start1' coordinate is modified by adding 'sshift1'. Similarly 'end1', 'start2', 'end2' coordinates are altered by adding 'eshift1', 'sshift2' and 'eshift2' accordingly.

Value

None.

See Also

gvtrack.create, gvtrack.iterator

Examples

gdb.init_examples()
gvtrack.create("vtrack1", "rects_track")
gvtrack.iterator.2d("vtrack1", sshift1 = 1000, eshift1 = 2000)
gextract(
    "rects_track", "vtrack1",
    gintervals.2d(1, 0, 5000, 2, 0, 5000)
)

misha documentation built on Sept. 14, 2023, 5:08 p.m.