pheno2geno: High-Throughput Generation of Genetic Markers and Maps from Molecular Phenotypes for Crosses Between Inbred Strains

High-throughput generation of genetic markers from molecular phenotypes for crosses between inbred strains. These markers can be use to saturate existing genetic map or creating a new one.

Author
Konrad Zych <k.zych@rug.nl> and Danny Arends <danny.arends@gmail.com>
Date of publication
2015-03-25 16:08:51
Maintainer
Konrad Zych <k.zych@rug.nl>
License
GPL-3
Version
1.3.1

View on CRAN

Files in this package

pheno2geno
pheno2geno/inst
pheno2geno/inst/BUGS.txt
pheno2geno/inst/CITATION
pheno2geno/inst/TODO.txt
pheno2geno/tests
pheno2geno/tests/1k
pheno2geno/tests/1k/maps_genetic.txt
pheno2geno/tests/1k/offspring_annotations.txt
pheno2geno/tests/1k/offspring_phenotypes.txt
pheno2geno/tests/1k/test.r
pheno2geno/tests/1k/offspring_genotypes.txt
pheno2geno/tests/parental_phenotypes.csv
pheno2geno/tests/map.csv
pheno2geno/tests/offspring_phenotypes.csv
pheno2geno/tests/test_analysis.R
pheno2geno/tests/genotypes.csv
pheno2geno/tests/mycross.csv
pheno2geno/NAMESPACE
pheno2geno/data
pheno2geno/data/datalist
pheno2geno/data/testPopulation.rda
pheno2geno/data/testCross.rda
pheno2geno/R
pheno2geno/R/markersCorPlot.R
pheno2geno/R/create.population.r
pheno2geno/R/transformations.R
pheno2geno/R/cross.denovo.R
pheno2geno/R/read.population.R
pheno2geno/R/plotRoutines.R
pheno2geno/R/cross.saturate.R
pheno2geno/R/save.gff.R
pheno2geno/R/qtl.comparison.plot.R
pheno2geno/R/plotMapComparison.R
pheno2geno/R/utilities.R
pheno2geno/R/fake.population.R
pheno2geno/R/write.population.R
pheno2geno/R/scan.qtls.r
pheno2geno/R/postprocessing.R
pheno2geno/R/power.plot.R
pheno2geno/R/markerPlacementPlot.R
pheno2geno/R/find.mixups.R
pheno2geno/R/generate.biomarkers.R
pheno2geno/R/checks.R
pheno2geno/R/assignLinkageGroups.R
pheno2geno/R/findDiffExpressed.R
pheno2geno/R/genotypesToCross.R
pheno2geno/R/map.functions.R
pheno2geno/R/create.mixtures.R
pheno2geno/R/add.to.population.R
pheno2geno/README.md
pheno2geno/MD5
pheno2geno/DESCRIPTION
pheno2geno/man
pheno2geno/man/phenotypes2genotypes-internal.rd
pheno2geno/man/testCross.rd
pheno2geno/man/plotChildrenExpression.rd
pheno2geno/man/phenotypes2genotypes-package.rd
pheno2geno/man/plotParentalExpression.rd
pheno2geno/man/changeChromNumber.rd
pheno2geno/man/reorganizeMarkersWithin.rd
pheno2geno/man/markersCorPlot.rd
pheno2geno/man/pull.biomarkers.rd
pheno2geno/man/transformations.rd
pheno2geno/man/find.mixups.rd
pheno2geno/man/assignedChrToMarkers.rd
pheno2geno/man/cross.denovo.rd
pheno2geno/man/findDiffExpressed.rd
pheno2geno/man/write.population.rd
pheno2geno/man/qtl.comparison.plot.rd
pheno2geno/man/projectOldMarkers.rd
pheno2geno/man/RPpval.rd
pheno2geno/man/map.functions.rd
pheno2geno/man/add.to.population.rd
pheno2geno/man/fake.population.rd
pheno2geno/man/scan.qtls.rd
pheno2geno/man/read.population.rd
pheno2geno/man/plotMarkerDistribution.rd
pheno2geno/man/save.gff.rd
pheno2geno/man/set.geno.from.cross.rd
pheno2geno/man/testPopulation.rd
pheno2geno/man/cross.saturate.rd
pheno2geno/man/markerPlacementPlot.rd
pheno2geno/man/generate.biomarkers.rd
pheno2geno/man/plotMapComparison.rd
pheno2geno/man/create.population.rd
pheno2geno/man/power.plot.rd