Description Usage Arguments Details Value Author(s) References See Also Examples
Using Rank Product or student t-test analysis to select differentially expressed genes.
1 2 | find.diff.expressed(population,use=c("ttest","rankprod"),verbose=FALSE,
debugMode=0,...)
|
population |
An object of class |
use |
Which method should be used for selecting differentially expressed probes:
|
verbose |
Be verbose. |
debugMode |
1: Print out checks, 2: print additional time information. |
... |
Additional arguments passed to RP function. |
This function finds probes differentially expressed between founders using either student t.test or RankProd (RankProd package from Bioconductor has to be installed before this option is enabled.).
Object of class population
.
Konrad Zych k.zych@rug.nl, Danny Arends Danny.Arends@gmail.com Maintainer: Konrad Zych k.zych@rug.nl
Hong F, Breitling R, McEntee CW, Wittner BS, Nemhauser JL, Chory J.(2006) RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis. Bioinformatics, 15;22(22):2825-7.
RP
- Perform rank product method to identify differentially expressed genes.
read.population
- Load genotype, phenotype, genetic map data files into R environment into a population object.
generate.biomarkers
- Creating genotypes from children phenotypes.
showRPpval
- Printing out p-values calculated by the find.diff.expressed function.
plotRPpval
- Plotting p-values calculated by the find.diff.expressed function.
1 2 |
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