Description Usage Arguments Details Value Author(s) See Also Examples
View source: R/markerPlacementPlot.R
Plot number of markers selected with different thresholds.
1 2 | markerPlacementPlot(population, placeUsing=c("qtl","correlation"),
thrRange=c(1,5,1),cross,verbose=FALSE)
|
population |
An object of class |
placeUsing |
How position of the new markers on the saturated map should be determinate:
|
thrRange |
Range of the threshold to be checked. Specified in a format(start,stop,step). |
cross |
An object of class |
verbose |
Be verbose. |
This plot is really useful while saturating existing map (using cross.saturate
). It helps choose best threshold for marker selection, showing how much markers will
be selected with different threshold values.
None.
Konrad Zych k.zych@rug.nl, Danny Arends Danny.Arends@gmail.com Maintainer: Konrad Zych k.zych@rug.nl
cross.saturate
- Saturate existing map.
reorganizeMarkersWithin
- Apply new ordering on the cross object usign ordering vector.
assignChrToMarkers
- Create ordering vector from chromosome assignment vector.
reduceChromosomesNumber
- Number of routines to reduce number of chromosomes of cross object.
generate.biomarkers
- Creating genotype markers out of gene expression data.
1 2 3 4 | data(testCross)
data(testPopulation)
markerPlacementPlot(testPopulation,placeUsing="qtl",cross=testCross)
markerPlacementPlot(testPopulation,placeUsing="correlation",cross=testCross)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.