plotMapComparison: Plotting routine for comparison of two genetic maps.

In pheno2geno: High-Throughput Generation of Genetic Markers and Maps from Molecular Phenotypes for Crosses Between Inbred Strains

Description

Plotting routine for comparison of two genetic maps.

Usage

	plotMapComparison(cross, population, map=c("genetic","physical"), chr)

Arguments

cross	An object of class cross. See read.cross for details.
population	An object of class population. See create.population for details.
map	Which map (from ones stored in population$maps) should be used fo assigning chromosomes on the created map.
chr	Specifies subset of chromosomes to be shown.

Value

None.

Author(s)

Konrad Zych [e-mail], Danny Arends [e-mail] Maintainer: Konrad Zych [e-mail]

See Also

• markersCorPlot - Plotting correlation between two maps together with markers placement (comparison of coverage).

• projectOldMarkers - Plotting routine for showing how markers from original map are placed on saturated map.

• cross.saturate - Saturate existing map.

• cross.denovo - Create de novo genetic map or chromosome assignment vector.

Examples

	data(testPopulation)
	data(testCross)
	plotMapComparison(testCross,testPopulation,map="genetic")

pheno2geno documentation built on May 2, 2019, 6:35 a.m.