Description Usage Arguments Details Value Author(s) See Also Examples
Visualize the outcome of a Rank product analysis, this function will print/plot p-values calculated by the find.diff.expressed function.
1 2 | showRPpval(population,markers=1:10)
plotRPpval(population,thresholdRange=c(0.01,0.1,0.01))
|
population |
An object of class |
markers |
Numbers of markers to be printed |
thresholdRange |
Specifies in which range threshold will be checked (start, stop, step). |
Those are two helper functions of find.diff.expressed
. showRPpval is printing to the screen p-values for specified markers, while plotRPpval is showing
how many markers will be selected using different thresholds.
An object of class population, (see create.population
for more details) with object of class RP saved into population$founders$RP.
Konrad Zych k.zych@rug.nl, Danny Arends Danny.Arends@gmail.com Maintainer: Konrad Zych k.zych@rug.nl
RP
- Perform rank product method to identify differentially expressed genes.
find.diff.expressed
- Select differentially expressed genes using Rank Product or student t-test analysis.
generate.biomarkers
- Creating genotypes from children phenotypes.
showRPpval
- Printing out p-values calculated by the find.diff.expressed function.
plotRPpval
- Plotting p-values calculated by the find.diff.expressed function.
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