Description Usage Arguments Details Value Author(s) See Also Examples
View source: R/markersCorPlot.R
Plotting correlation between two maps together with markers placement (comparison of coverage).
1 2 3 | markersCorPlot(cross, population, map=c("genetic","physical"), cmBetween=25,
comparisonMethod = c(sumMajorityCorrelation,majorityCorrelation,
meanCorrelation,majorityOfMarkers), chr, show.legend=FALSE, verbose=TRUE)
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cross |
R/qtl cross type object. |
population |
An object of class |
map |
Which map (from ones stored in population$maps) should be used fo assigning chromosomes on the created map. |
cmBetween |
Offset between chromosomes specified in cM. |
comparisonMethod |
Method used to compare chromosomes from the new map to the original ones while assigning:
|
chr |
Specifies subset of chromosomes to be shown. |
show.legend |
Shall the legend be shown on the plot. |
verbose |
Be verbose. |
Plots markers from moth old and new map as points and in the background - comparison between them done using selected comparison method.
Matrix of comparisons between chromosomes obtained using comparison method.
Konrad Zych k.zych@rug.nl, Danny Arends Danny.Arends@gmail.com Maintainer: Konrad Zych k.zych@rug.nl
plotMapComparison
- Plotting routine for comparison of two genetic maps.
projectOldMarkers
- Plotting routine for showing how markers from original map are placed on saturated map.
cross.saturate
- Saturate existing map.
cross.denovo
- Create de novo genetic map or chromosome assignment vector.
1 2 3 | data(testPopulation)
data(testCross)
markersCorPlot(testCross,testPopulation,map="genetic")
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