map.functions: Functions to provide some descriptive statistics on genetic...

In pheno2geno: High-Throughput Generation of Genetic Markers and Maps from Molecular Phenotypes for Crosses Between Inbred Strains

Description

Functions to provide some descriptive statistics on genetic maps

Usage

  avg_map_distances(m)
  map_distances(m)

Arguments

m	An object of class cross or map, See read.cross or pull.map for details.

Value

A list with per chromosomes either the average map distance or the total distance

Author(s)

Danny Arends [e-mail], Konrad Zych [e-mail] Maintainer: Danny Arends [e-mail]

See Also

• read.population - Load genotype, phenotype, genetic map data files into R environment into a population object.

• cross.denovo - Create de novo genetic map or vector showing how chromosomes should be assigned.

• cross.saturate - Saturate existing map.

• find.diff.expressed - Using Rank Product or student t-test analysis to select differentially expressed genes.

Examples

	data(testCross)
  avg_map_distances(testCross)
  map_distances(testCross)

pheno2geno documentation built on May 2, 2019, 6:35 a.m.