set.geno.from.cross: Pull genotype from an object of class cross.

In pheno2geno: High-Throughput Generation of Genetic Markers and Maps from Molecular Phenotypes for Crosses Between Inbred Strains

Description

Pulling genotypes with a map from cross and putting into population object.

Usage

set.geno.from.cross(cross,population,map=c("genetic","physical"))
	

Arguments

cross	An object of class cross. See read.cross for details. If not supported, it will be created using data stored in population
population	An object of class population. See create.population for details.
map	In which map ofd an population object shall map pulled from cross be stored: genetic - genetic map - population$offspring$maps$genetic. physical - physical map - population$offspring$maps$physical.

Details

This function pull genotypes with a map from the cross object and puts them into provided population object. This is useful if the same cross is saturated multiple times.

Value

An object of class population. See create.population for details.

Author(s)

Konrad Zych [e-mail], Danny Arends [e-mail] Maintainer: Konrad Zych [e-mail]

See Also

• reorganizeMarkersWithin - Apply new ordering on the cross object usign ordering vector.

• assignChrToMarkers - Create ordering vector from chromosome assignment vector.

• cross.denovo - Create de novo genetic map or chromosome assignment vector.

• reduceChromosomesNumber - Number of routines to reduce number of chromosomes of cross object.

Examples

	data(testPopulation)
	data(testCross)
	testPopulation <- set.geno.from.cross(testCross,testPopulation)

pheno2geno documentation built on May 2, 2019, 6:35 a.m.