parse.dssp: Parse a DSSP File to Return a Dataframe

In ptm: Analyses of Protein Post-Translational Modifications

Parse a DSSP File to Return a Dataframe

Description

Parses a DSSP file to return a dataframe.

Usage

parse.dssp(file, keepfiles = FALSE)

Arguments

file	input dssp file.
keepfiles	logical, if TRUE the dataframe will be saved in the working directory and we will keep the dssp file.

Details

If the argument 'keepfiles' is not set to TRUE, the dssp file used to get the parsed dataframe will be removed.

Value

Returns a dataframe providing data for 'acc', 'ss', 'phi' and 'psi' for each residues from the structure.

Author(s)

Juan Carlos Aledo

References

Touw et al (2015) Nucl. Ac. Res. 43(Database issue): D364-D368 (PMID: 25352545).

See Also

download.dssp(), compute.dssp(), mkdssp() and acc.dssp()

Examples

## Not run: compute.dssp('3cwm'); parse.dssp('3cwm.dssp')

ptm documentation built on Aug. 7, 2022, 5:05 p.m.