pdb.quaternary: Protein Subunit Composition

In ptm: Analyses of Protein Post-Translational Modifications

Protein Subunit Composition

Description

Determines the subunit composition of a given protein.

Usage

pdb.quaternary(pdb, keepfiles = FALSE)

Arguments

pdb	the path to the PDB of interest or a 4-letter identifier.
keepfiles	logical, if TRUE the fasta file containing the alignment of the subunits is saved in the current directory, as well as the split pdb files.

Details

A fasta file containing the alignment among the subunit sequences can be saved in the current directory if required.

Value

This function returns a list with four elements: (i) a distances matrix, (ii) the sequences, (iii) chains id, (iv) the PDB ID used.

Author(s)

Juan Carlos Aledo

Examples

## Not run: pdb.quaternary('1bpl')

ptm documentation built on Aug. 7, 2022, 5:05 p.m.