pdb.select: Select the PDB with the Optimal Coverage to the UniProt...

In ptm: Analyses of Protein Post-Translational Modifications

Select the PDB with the Optimal Coverage to the UniProt Sequence

Description

Select the PDB and chain with the optimal coverage to a given UniProt sequence.

Usage

pdb.select(up_id, threshold = 0.9)

Arguments

up_id	the UniProt ID.
threshold	coverage value that when reached the search is halted.

Value

A list of two elements: (i) the PDB ID and (ii) the chain. The coverage with the UniProt sequence is given as an attribute.

Author(s)

Juan Carlos Aledo

See Also

pdb.quaternary(), pdb.chain(), pdb.res(), pdb.pep(), uniprot2pdb(), pdb2uniprot()

Examples

## Not run: pdb.select('P01009', threshold = 0.8)

ptm documentation built on Aug. 7, 2022, 5:05 p.m.