prot2codon: Find the Coding Triplets for a Given Protein

In ptm: Analyses of Protein Post-Translational Modifications

Find the Coding Triplets for a Given Protein

Description

Finds the codons corresponding to a given protein.

Usage

prot2codon(prot, chain = "", laxity = TRUE)

Arguments

prot	is either a UniProt or PDB id, or the path to a pdb file.
chain	when prot corresponds to a pdb, the chain of interest must be provided.
laxity	logical, if FALSE the program stop when a mismatch between the protein and the gene sequences is detected. Otherwise the program doesn't stop and at the end points out the mismatches.

Value

Returns a dataframe with as many rows as residues has the protein.

Author(s)

Juan Carlos Aledo

Examples

## Not run: prot2codon('P01009')

ptm documentation built on Aug. 7, 2022, 5:05 p.m.