Estimate the diversity of each sample.
Control how/whether rarefactions are done prior to alpha diversity computations. Options are:
A data frame of four diversity values for each sample in
biom. The column names are Sample, Depth and the
diversity metrics: OTUs, Shannon, Chao1, Simpson,
and InvSimpson. The row names are the sample names, except when
multiple rarefactions are done.
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