rbiom: rbiom: Read/Write, Transform, and Summarize BIOM Data
In rbiom: Read/Write, Transform, and Summarize 'BIOM' Data
Description
A toolkit for working with Biological Observation Matrix (BIOM) files.
Features include reading/writing all BIOM formats, rarefaction, alpha
diversity, beta diversity (including UniFrac), summarizing counts by
taxonomic level, and sample subsetting. Standalone functions for
reading, writing, and subsetting phylogenetic trees are also provided.
All CPU intensive operations are encoded in C with multi-thread support.
Multithreading
Many rbiom functions support multithreading:
The default behavior of these function is to run on as many cores as are
available in the local compute environment. If you wish to limit the number
of simultaneous threads, set RcppParallel's numThreads option.
For instance:
1
RcppParallel::setThreadOptions(numThreads = 4)
rbiom documentation built on Nov. 5, 2021, 9:11 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
A toolkit for working with Biological Observation Matrix (BIOM) files. Features include reading/writing all BIOM formats, rarefaction, alpha diversity, beta diversity (including UniFrac), summarizing counts by taxonomic level, and sample subsetting. Standalone functions for reading, writing, and subsetting phylogenetic trees are also provided. All CPU intensive operations are encoded in C with multi-thread support.
Multithreading
Many rbiom functions support multithreading:
The default behavior of these function is to run on as many cores as are
available in the local compute environment. If you wish to limit the number
of simultaneous threads, set RcppParallel's numThreads option.
For instance:
1 | RcppParallel::setThreadOptions(numThreads = 4)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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