counts: Get the abundance counts.
In rbiom: Read/Write, Transform, and Summarize 'BIOM' Data
Description
Usage
Arguments
Value
See Also
Examples
Description
Get the abundance counts.
Usage
1
counts(biom)
Arguments
biom
A BIOM object, as returned from read.biom.
Value
A numeric matrix of the sample abundance counts in biom.
See Also
Other accessor functions:
info(),
metadata(),
nsamples(),
ntaxa(),
phylogeny(),
sample.names(),
sequences(),
taxa.names(),
taxa.ranks(),
taxonomy()
Examples
1
2
3
4
5
6
library(rbiom)
infile <- system.file("extdata", "hmp50.bz2", package = "rbiom")
biom <- read.biom(infile)
counts(biom)[1:4,1:5]
rbiom documentation built on Nov. 5, 2021, 9:11 a.m.
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Description Usage Arguments Value See Also Examples
Description
Get the abundance counts.
Usage
1 | counts(biom)
|
Arguments
biom |
A |
Value
A numeric matrix of the sample abundance counts in biom.
See Also
Other accessor functions:
info(),
metadata(),
nsamples(),
ntaxa(),
phylogeny(),
sample.names(),
sequences(),
taxa.names(),
taxa.ranks(),
taxonomy()
Examples
1 2 3 4 5 6 | library(rbiom)
infile <- system.file("extdata", "hmp50.bz2", package = "rbiom")
biom <- read.biom(infile)
counts(biom)[1:4,1:5]
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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