phylogeny: Get the phylogenetic tree.

Description Usage Arguments Value See Also Examples

Description

Get the phylogenetic tree.

Usage

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phylogeny(biom)

Arguments

biom

A BIOM object, as returned from read.biom.

Value

A phylo class object of the tree in biom.

See Also

Other accessor functions: counts(), info(), metadata(), nsamples(), ntaxa(), sample.names(), sequences(), taxa.names(), taxa.ranks(), taxonomy()

Examples

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    library(rbiom)
    
    infile <- system.file("extdata", "hmp50.bz2", package = "rbiom")
    biom <- read.biom(infile)
    
    summary(phylogeny(biom))

rbiom documentation built on July 2, 2020, 1:47 a.m.