taxa.ranks: Get the taxa ranks.

In rbiom: Read/Write, Transform, and Summarize 'BIOM' Data

Description

Get the taxa ranks.

Usage

taxa.ranks(biom)

Arguments

biom	A BIOM object, as returned from read.biom.

Value

A character vector of the taxa ranks in biom.

See Also

Other accessor functions: counts(), info(), metadata(), nsamples(), ntaxa(), phylogeny(), sample.names(), sequences(), taxa.names(), taxonomy()

Examples

    library(rbiom)
    
    infile <- system.file("extdata", "hmp50.bz2", package = "rbiom")
    biom <- read.biom(infile)
    
    taxa.ranks(biom)

rbiom documentation built on Nov. 5, 2021, 9:11 a.m.