write.biom: Write counts, metadata, taxonomy, and phylogeny to a biom...
In rbiom: Read/Write, Transform, and Summarize 'BIOM' Data
Description
Usage
Arguments
Value
Description
Write counts, metadata, taxonomy, and phylogeny to a biom file.
Usage
1
write.biom(biom, file, format = "json")
Arguments
biom
The BIOM object to save to the file.
file
Path to the output file.
format
Options are “tab”,
“json”, and “hdf5”,
corresponding to classic tabular format, biom format version 1.0 and
biom version 2.1, respectively. Abbreviations are also accepted. See
http://biom-format.org/documentation/ for details. NOTE: to write
HDF5 formatted BIOM files, the BioConductor R package rhdf5 must
be installed.
Value
On success, returns NULL invisibly.
rbiom documentation built on Nov. 5, 2021, 9:11 a.m.
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Description Usage Arguments Value
Description
Write counts, metadata, taxonomy, and phylogeny to a biom file.
Usage
1 | write.biom(biom, file, format = "json")
|
Arguments
biom |
The BIOM object to save to the file. |
file |
Path to the output file. |
format |
Options are “tab”,
“json”, and “hdf5”,
corresponding to classic tabular format, biom format version 1.0 and
biom version 2.1, respectively. Abbreviations are also accepted. See
http://biom-format.org/documentation/ for details. NOTE: to write
HDF5 formatted BIOM files, the BioConductor R package |
Value
On success, returns NULL invisibly.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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