Files in secr

Spatially Explicit Capture-Recapture

R/RcppExports.R R/read.mask.R R/closure.R R/as.data.frame.R R/collate.R R/summary.secr.R R/ClosedN.R R/trend.R R/make.capthist.R R/summary.capthist.R R/usagePlot.R R/generalsecrloglik.R R/plot.traps.R R/esaPlot.R R/plot.popn.R R/esa.R R/secr.design.MS.R R/randomHabitat.R R/makeStart.R R/join2.R R/methods.R R/telemetry.R R/head.R R/detectpar.R R/snip.R R/D.designdata.R R/fastsecrloglik.R R/addCovariates.R R/Dsurface.R R/plot.capthist.r R/read.traps.R R/rbind.mask.R R/clone.R R/circular.R R/summary.traps.R R/predict.secr.R R/reparameterize.R R/sim.detect.R R/rbind.capthist.R R/make.spcosa.R R/loglikhelperfn.R R/setNumThreads.R R/homerange.R R/Enk.R R/fxi.R R/pdot.R R/gridcells.R R/simulate.R R/summary.popn.R R/trap.builder.R R/par.secr.fit.R R/rbind.traps.R R/derivedMS.R R/verify.R R/exportedutility.R R/logmultinom.R R/LLsurface.secr.R R/onAttach.R R/split.mask.R R/split.traps.R R/RSE.R R/extractMoves.R R/sim.secr.R R/split.capthist.R R/list.secr.fit.R R/make.tri.R R/mash.r R/empirical.R R/AIC.R R/mask.check.R R/confint.secr.R R/LRtest.R R/Rsurface.R R/make.mask.R R/rbind.popn.R R/addTelemetry.R R/DENSITY.R R/sim.capthist.R R/chatnk.R R/raster.R R/modelAverage.R R/distancetotrap.R R/secr.test.R R/preparedata.R R/make.grid.R R/onLoad.R R/xy2CH.R R/makeNewData.R R/movemat.R R/plotMaskEdge.R R/utility.R R/suggest.buffer.R R/write.traps.R R/superN.R R/secr.fit.R R/autoini.R R/writeGPS.R R/CV.R R/binCovariate.R R/plot.mask.r R/write.mask.R R/summary.mask.R R/Fletcher.chat.R R/pmixProfileLL.R R/plot.secr.R R/RMarkInput.R R/write.captures.R R/regionN.R R/MCgof.R R/PG.R R/ellipse.secr.R R/addSightings.R R/DA.R R/defunct.R R/kfn.R R/reduce.R R/MCgof.methods.R R/deviance.R R/sim.popn.R R/score.test.R R/discretize.R inst/doc/secr-overview.pdf inst/doc/secr-datainput.R inst/doc/secr-datainput.pdf inst/doc/secr-overview.Rmd inst/doc/secr-datainput.Rmd inst/doc/secr-overview.R inst/extdata/lizarddata.R tests/testthat.R tests/testthat/test-datamanipulation.R tests/testthat/test-MCgof.R tests/testthat/test-signaldetector.R tests/testthat/test-trapbuilder.R tests/testthat/test-markresight.R tests/testthat/test-transectdetectors.R tests/testthat/test-start.R tests/testthat/test-derived.R tests/testthat/test-regionN.R tests/testthat/test-initial.R tests/testthat/test-countdetectors.R vignettes/secr-overview.Rmd vignettes/secr-datainput.Rmd man/subset.traps.Rd man/MCgof.Rd man/rectangularMask.Rd man/plot.mask.Rd man/stoatDNA.Rd man/plot.traps.Rd man/timevaryingcov.Rd man/read.telemetry.Rd man/fxi.Rd man/ovensong.Rd man/signalmatrix.Rd man/write.Rd man/predictDsurface.Rd man/summary.traps.Rd man/cluster.Rd man/DENSITY.Rd man/troubleshooting.Rd man/derivedMS.Rd man/traps.Rd man/subset.mask.Rd man/detectfn.Rd man/as.data.frame.Rd man/make.tri.Rd man/spacing.Rd man/empirical.Rd man/D.designdata.Rd man/nontarget.Rd man/chat.Rd man/deermouse.Rd man/trend.Rd man/sharefactorlevels.Rd man/turnover.Rd man/print.capthist.Rd man/FAQ.Rd man/pmixProfileLL.Rd man/reduce.Rd man/hornedlizard.Rd man/subset.capthist.Rd man/addTelemetry.Rd man/Parallel.Rd man/makeNewData.Rd man/make.traps.Rd man/detector.Rd man/join.Rd man/make.mask.Rd man/logit.Rd man/trapsfn.Rd man/esaPlot.Rd man/RMarkInput.Rd man/binCovariate.Rd man/clone.Rd man/secrtest.Rd man/verify.Rd man/logmultinom.Rd man/randomHabitat.Rd man/as.mask.Rd man/MCgof.methods.Rd man/make.spcosa.Rd man/capthistfn.Rd man/possum.Rd man/LLsurface.Rd man/secr.test.Rd man/ms.Rd man/sim.secr.Rd man/distancetotrap.Rd man/circular.Rd man/capthist.Rd man/make.capthist.Rd man/print.traps.Rd man/transformations.Rd man/RSE.Rd man/secr-defunct.Rd man/speed.Rd man/trim.Rd man/session.Rd man/DA.Rd man/addCovariates.Rd man/collate.Rd man/rbind.traps.Rd man/plot.popn.Rd man/blackbear.Rd man/signal.Rd man/region.N.Rd man/read.mask.Rd man/pdot.Rd man/AIC.secr.Rd man/addSightings.Rd man/summary.mask.Rd man/utility.Rd man/read.traps.Rd man/homerange.Rd man/ovenbird.Rd man/print.secr.Rd man/secrdemo.Rd man/manip.Rd man/popn.Rd man/confint.secr.Rd man/trap.builder.Rd man/usagePlot.Rd man/makeStart.Rd man/updateCH.Rd man/plotmaskedge.Rd man/plot.secr.Rd man/sim.capthist.Rd man/coef.secr.Rd man/vcov.secr.Rd man/expected.n.Rd man/make.systematic.Rd man/list.secr.fit.Rd man/kfn.Rd man/secr-deprecated.Rd man/predict.secr.Rd man/rbind.popn.Rd man/sighting.Rd man/polyarea.Rd man/OVpossum.Rd man/details.Rd man/make.lacework.Rd man/fxTotal.Rd man/Dsurface.Rd man/occasionKey.Rd man/as.popn.Rd man/ellipse.secr.Rd man/closedN.Rd man/plot.capthist.Rd man/deletemaskpoints.Rd man/contour.Rd man/summary.capthist.Rd man/subset.popn.Rd man/CV.Rd man/writeGPS.Rd man/PG.Rd man/reduce.capthist.Rd man/LRtest.Rd man/discretize.Rd man/mask.Rd man/secr-internal.Rd man/skink.Rd man/gridcells.Rd man/covariates.Rd man/head.Rd man/pointsInPolygon.Rd man/hcov.Rd man/snip.Rd man/closure.Rd man/setNumThreads.Rd man/sim.popn.Rd man/secr-package.Rd man/secr.fit.Rd man/sort.Rd man/AICcompatible.Rd man/coulombe.Rd man/summary.popn.Rd man/smooths.Rd man/secr.design.MS.Rd man/score.test.Rd man/raster2.Rd man/mask.check.Rd man/modelAverage.Rd man/extractMoves.Rd man/rbind.capthist.Rd man/Fletcher.chat.Rd man/autoini.Rd man/secr-version5.Rd man/suggest.buffer.Rd man/Rsurface.Rd man/strip.legend.Rd man/usage.Rd man/userdist.Rd man/secrRNG.Rd man/deviance.secr.Rd