rvmeta.writeScoreData: Write score-based association statistics files.

In seqminer: Efficiently Read Sequence Data (VCF Format, BCF Format, METAL Format and BGEN Format) into R

Write score-based association statistics files.

Description

Write score-based association statistics files.

Usage

rvmeta.writeScoreData(rvmetaData, outName, createIndex = FALSE)

Arguments

rvmetaData	a list vector. It's usually read by rvmeta.readDataByRange or rvmeta.readDataByGene function
outName	character, a text indicating output file prefix
createIndex	boolean, (default FALSE), whether or not to create the index

Value

TRUE only if succeed

See Also

http://zhanxw.com/seqminer/ for online manual and examples

Examples

scoreFileName = system.file("rvtests/rvtest.MetaScore.assoc.anno.gz", package = "seqminer")
covFileName = system.file("rvtests/rvtest.MetaCov.assoc.gz", package = "seqminer")
geneFile = system.file("vcf/refFlat_hg19_6col.txt.gz", package = "seqminer")
cfh <- rvmeta.readDataByRange(scoreFileName, covFileName, "1:196621007-196716634")

outFile <- file.path(tempdir(), "cfh.MetaScore.assoc")
rvmeta.writeScoreData(cfh, outFile)
cat('Outputted MetaScore file are in the temp directory:', outFile, '\n')

seqminer documentation built on Sept. 2, 2023, 9:08 a.m.